Problems compiling GeFREALIGN

I have problems compiling the GPU version of frealign on our system.

I updated the Makefile to the right gcc version, I tried it with gcc 3.4 and 4.3, but both will not work. When I use the nvcc string as provided in the Makefile (nvcc -arch sm_13 -lpthread --compiler-bindir /usr/bin/gcc) I get the following error:
gcc -O3 -DPROTOTYPE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o ioc.o ioc.c
ar r frealign_v8.a ioc.o
nvcc -arch sm_13 -lpthread --compiler-bindir /usr/bin/gcc -O3 -lg2c -lcufft -DPROTOTYPE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c a3d3_gpu.cu
/usr/include/surface_functions.h: In function 'void surf1Dread(T*, surface, int, int, cudaSurfaceBoundaryMode)':
/usr/include/surface_functions.h:100: error: there are no arguments to '__surf1Dreadc1' that depend on a template parameter, so a declaration of '__surf1Dreadc1' must be available
/usr/include/surface_functions.h:100: error: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
/usr/include/surface_functions.h:101: error: there are no arguments to '__surf1Dreads1' that depend on a template parameter, so a declaration of '__surf1Dreads1' must be available
/usr/include/surface_functions.h:102: error: there are no arguments to '__surf1Dreadu1' that depend on a template parameter, so a declaration of '__surf1Dreadu1' must be available
/usr/include/surface_functions.h:103: error: there are no arguments to '__surf1Dreadu2' that depend on a template parameter, so a declaration of '__surf1Dreadu2' must be available
/usr/include/surface_functions.h:104: error: there are no arguments to '__surf1Dreadu4' that depend on a template parameter, so a declaration of '__surf1Dreadu4' must be available
/usr/include/surface_functions.h: In function 'void surf2Dread(T*, surface, int, int, int, cudaSurfaceBoundaryMode)':
/usr/include/surface_functions.h:460: error: there are no arguments to '__surf2Dreadc1' that depend on a template parameter, so a declaration of '__surf2Dreadc1' must be available
/usr/include/surface_functions.h:461: error: there are no arguments to '__surf2Dreads1' that depend on a template parameter, so a declaration of '__surf2Dreads1' must be available
/usr/include/surface_functions.h:462: error: there are no arguments to '__surf2Dreadu1' that depend on a template parameter, so a declaration of '__surf2Dreadu1' must be available
/usr/include/surface_functions.h:463: error: there are no arguments to '__surf2Dreadu2' that depend on a template parameter, so a declaration of '__surf2Dreadu2' must be available
/usr/include/surface_functions.h:464: error: there are no arguments to '__surf2Dreadu4' that depend on a template parameter, so a declaration of '__surf2Dreadu4' must be available
make: *** [frealign_v8.a(a3d3_gpu.o)] Error 1


I found in a different support forum a solution for this error:
nvcc -arch sm_13 -lpthread --compiler-bindir /usr/bin/gcc --compiler-options -fpermissive

These options seems to fix the problem. But then I run into new error messages:
http://pastebin.com/GsdCvAB1 (I posted it on pastebin, since there are more then 1000 lines of code...)

COMP = gfortran

Maybe one problem could be, that I have to use the gfortran compiler instead of g77. I read on the internet, that this should work, but maybe someone has already experience with this compiler in this case.

Hope somebody has an idea.
Regards Mario