PGFIO-F-225/list-directed read/unit=5/lexical error-- unknown token type.

Submitted by dmbelnap on Thu, 2010-10-07 18:37

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Frealign

I'm getting the following error message:

PGFIO-F-225/list-directed read/unit=5/lexical error-- unknown token type.
File name = stdin formatted, sequential access record = 10
In source file card10.f, at line number 273

Looks like the problem might be in reading the image files. 2D Image files are MRC format, created with Bsoft package to convert from PIF to MRC format (specific Bsoft command is "bhead -verb 7 -info -slices A04815_particles.pif A04815_particles.mrc", "slices" option makes a "3D" file from a stack of 2D images). 3D model is also an MRC-format file.

Thanks.

Alexis Thu, 2010-10-07 19:31

Actually, I bet there is something wrong with your input to frealign - check that your CARD10 input is definitely correct. This looks like a straightforward IO error from frealign as it's trying to parse your input.

If you're unsure, post your input here.

dmbelnap Fri, 2010-10-08 19:29

Our microscope puts a letter at the beginning of the micrograph integer number. Removing the letter fixed the problem. Thanks.