error: "ls: no match" when run the mult_refine_n.com in Frealign

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Hi Niko,

I recently tried to use frealign to determine my particles' initial orientations, and I could be able to start the job normally after typing frealign_run_refine and no error info coming out in the frealign.log file, but somehow the job can not go forward and I got an error message “ls: no match” when the command mult_refine_n.com was executed. Do you have any idea what could cause that problem?

Any advice will be highly appreciated.

Best,
Zhihai

The only place where an "ls" command is executed in this script is when it tries to find the raw image stack. You should check that all your input files are present and accessible. Since your jobs ran before I assume that the scripts have been installed correctly.