Error card10 in frealign 9.06 and 9.07
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Hi Niko:
Trying run your new tests (the test that is in search directory) with both new versions frealign_v9.06 and frealign_v9.07, I had the following error:
PGFIO-F-235/formatted write/unit=6/edit descriptor does not match item type.
File name = stdout formatted, sequential access record = 51
In source file card10.f, at line number 373
0.000u 0.002s 0:00.00 0.0% 0+0k 0+0io 0pf+0w
The commands that I ran were:
cp -p pdh_1.mrc pdh_2.mrc
time ../../frealign_v9.07/bin/frealign_v9.exe << eot
M,-3,F,F,F,F,0,T,T,F,T,0,F,3,1 !CFORM,IFLAG,FMAG,FDEF,FASTIG,FPART,IEWALD,FBEAUT,FFILT,FBFACT,FMATCH,IFSC,FSTAT,IMEM,INTERP
146.,0.,3.11,1500.0,0.07,0.,100.,35.,15.,20,20 !RO,RI,PSIZE,WGH,XSTD,PBC,BOFF,DANG,ITMAX,IPMAX
1,1,1,1,1 !MASK
1,200 !IFIRST,ILAST
I !ASYM symmetry card (I=icosahedral)
1., 14.0, 25., 0., 2., 120., 0., 0. !RELMAG,DSTEP,TARGET,THRESH,CS,AKV,TX,TY
10.0, 100.0, 35.0, 150.0, 0. !RREC,RMIN,RMAX,DFSIG,RBFACT
pdh_stack.mrc
pdh_match.mrc
200,45000.,926,18500,18500,45.,0 !NIN,ABSMAGPIN,IFILMIN,DFMID1IN,DFMID2IN,ANGASTIN,MORE
pdh_2.par
pdh_2.shft
0., 0., 0., 0., 0., 0., 0., 0. !terminator with RELMAG=0.0
pdh_2.mrc
pdh_weights_2
pdh_map1_2
pdh_map2_2
pdh_phasediffs_2
pdh_pointspread_2
eot
The error comes when I try to set the particles params (200,45000.,926,18500,18500,45.,0). I'm making some mistake in the params?
Thanks in advance!!!
I've had a few problems
I've had a few problems myself using frealign 9.06 and 9.07.
In 9.07, your input file will not work because it is missing a parameter in card 7, which now has a RCLAS parameter, defining what is the high resolution limit you want to use in classification:
${rrec}, ${rlowref}, ${rref}, ${rclas}, 100.0, ${rbf} !RREC,RMAX1,RMAX2,RCLAS,DFSTD,RBFACT
Also, I have had issues using IMEM 3 and INTERP 1 in certain cases where the memory requirements were too big, so it is worth trying to set those to 0,0 to see if that helps.
HTH,
Axel
I am sorry for this error as
I am sorry for this error as this is a bug that for some reason did not show up on my system when I tested the script you are referring to in your post. I have corrected the problem and it is now working. Please download the new version and try again. The script should run without modification, except for setting the bindir variable, which should point to the directory with the Frealign binaries.