Problem alignment frames from K2
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Hello everybody,
I have been using UNBLUR to align frames from Falcon detector, it works well with 16 frames and 520Mb files. Now I am using K2 detector, and the frames from this detector are not "stack". I am using a Relion script to stack the 32 frames (52 Mb each) and the output is a .mrcs file (1.8 Gb each). I changed the format to mrc and tried to run UNBLUR but there is an error and the images are deleted. Sorry, I am a beginner, could you give some advise?
Thanks
Pablo
** Welcome to UnBlur **
Version - 1.0.2
Input Mode: Batch
Date & Time: 2016-07-14 17:45:09
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Input stack filename [my_movie.mrc] : FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429.mrc
Number of frames per movie [32] : 32
Output aligned sum file [my_aligned_sum.mrc] : FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429.mrc
Output shifts file [my_shifts.txt] : FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429.mrc
Pixel size of images (A) [1] : 1.4
Apply Dose filter? [NO] : NO
Save Aligned Frames? [NO] : NO
Set Expert Options? [NO] : NO
Performing Alignment...
**ERROR(ReadSlicesFromDisk): I/O error -1 when reading from: FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429.mrc
IO error message was: end-of-file during read, unit 22, file /mnt/atlantis/homes/pc557/unblur_prueba/FoilHole_3679268_Data
Total execution time : 1 second
2016-07-14 17:45:10: Fatal error (ImageFiles::ReadSlicesFromDisk): I/O error
srun: error: triton-1: task 0: Exited with exit code 128
Hi Pablo, It looks like you
Hi Pablo,
It looks like you are giving the same file for the input and output file.
The input is FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429.mrc, the output is the aligned sum, so you should call it something else e.g. "FoilHole_3679268_Data_3674926_3674927_20160705_0945-8429_aligned.mrc".
I think this should solve the problem.
Cheers,
Tim
Problem solved. Thank you
In reply to Hi Pablo, It looks like you by timgrant
Problem solved. Thank you very much Tim.
Regards
Pablo