ctffind 4.1.14 segmentation fault

 

Dear All,

Recently I have installed ctffind-4.1.14 from ctffind-4.1.14.tar.gz, with exactly the following prerequisites satisfied"

sudo yum -y install epel-release

sudo yum -y install fftw fftw-devel wxGTK3 wxGTK3-devel libtiff libtiff-devel cmake make gcc git which diffutils gcc-c++ libjpeg-turbo-devel

My dataset was exactly the relion 3.1 tutorial dataset.Until and even at the ctffind step, the process was done exactly based on the relion 3.1 tutorial.

However the run.err of the ctffind step was as attached.

Then with the 20170629_00049_frameImage.mrc (attached)from the relion 3.1 motion correction step as input, I have run standalone ctffind 4.1.14, the output was as following:

 

**   Welcome to Ctffind   **

 

            Version : 4.1.14

           Compiled : Aug 18 2020

               Mode : Interactive

 

Input image file name

[20170629_00049_frameImage.mrc]                    : 20170629_00049_frameImage.mrc

Output diagnostic image file name

[practice130.mrc]                                  : practiceptactice140.mrc

Pixel size [0.885]                                 : 0.885

Acceleration voltage [200]                         : 200

Spherical aberration [1.4]                         : 1.4

Amplitude contrast [0.1]                           : 0.1

Size of amplitude spectrum to compute [512]        : 512

Minimum resolution [30]                            : 30

Maximum resolution [5]                             : 5

Minimum defocus [5000]                             : 5000

Maximum defocus [50000]                            : 50000

Defocus search step [500]                          : 500

Do you know what astigmatism is present? [no]      : no

Slower, more exhaustive search? [no]               : no

Use a restraint on astigmatism? [no]               : no

Find additional phase shift? [no]                  : no

Do you want to set expert options? [no]            : no

File name: 20170629_00049_frameImage.mrc

File type: MRC

Dimensions: X = 512 Y = 512 Z = 1

Number of slices: 1

Working on micrograph 1 of 1

OpenMP is not available - will not use parallel threads.

 

      DFMID1      DFMID2      ANGAST          CC

     8238.96     8238.96        0.00     0.84406

Segmentation fault (core dumped)

I am looking forward to getting your advice on how to have the issue solved.

Best wishes,

 

Smith