Parameter file for mrefine.com

working_directory   .
data_input	    TMV
raw_images_high	    TMV_stack
raw_images_low	    TMV_stack
outer_radius        100.0
inner_radius         10.0
mol_mass           7600.0
thresh_reconst        0.0
thresh_refine        10.0
PBC                  20.0
BOFF                 35.0
DANG                100.0
MODE                  1
ITMAX                10
FPART                 F
FFILT                 T
FMATCH                F
FBEAUT                T
RBfactor	      0.0
Sym		      H
ALPHA			22.03
RISE			1.408
NSUBUNITS		49
NSTARTS			1
STIFFNESS		5.0
pix_size	      2.326
dstep		     14.0
Cs                    2.0
kV		    200.0
XSTD		      0.0
Amp_contrast	      0.07
res_reconstruction    6.0
res_low_refinement  500.0
res_high_refinement  10.0
nclasses              1
start_process	      2
end_process	      2
first_particle        1
last_particle	    179
refineangleinc        1
refineshiftinc        1
increment           179
